Venue: centre Broca Nouvelle-Aquitaine
Equipe : Grope d’imagerie Neurofonctionnelle
Neuroimaging the white matter function in the living human brain
This PhD project is focused on the functional mapping of the white matter of the human brain, which is relatively unexplored at the moment. Functional mapping consists in associating cognitive functions with their neuronal substrates, thus obtaining a better understanding of the relationships between structure and function organising the brain. However, functional mapping of the brain has mainly been focused on the study of grey matter in human neuroimaging. This bias comes from limitations in the methods, in particular magnetic resonance imaging (MRI), that results in a conceptual bias, a vision of cognitive networks limited to grey matter. And although the majority of synapses are indeed concentrated in grey matter, ignoring axon-mediated brain connectivity (in white matter) when studying brain function limits our understanding of the interaction between brain regions and the emergence of cognitive functions.
To enable the community to overcome these conceptual and technical barriers, we focused the first study of the thesis on the development of a method, the Functionnectome, that combines functional and structural connectivity information from MRI to offer a more integrated view of the brain and allow cognitive circuits to be represented directly on the white matter.
In the second study, we focused on characterising the brain’s functional organisation on a global scale in both grey and white matter. For this purpose, we used the “resting-state” paradigm in functional MRI (fMRI), i.e. the study of spontaneous fluctuations in the brain’s functional signal outside of a specific cognitive task (and therefore, at rest). These fluctuations generally reveal resting-state networks, which can then be used to functionally characterise the entire grey matter. In our study, we used the Functionnectome to combine the classical resting-state signal with white matter connectivity information, and thus study resting-state networks directly on white matter. We thus created WhiteRest, the first comprehensive atlas of resting-state networks showing both their grey and white matter coverage. We then validated WhiteRest by associating some of these networks with brain lesions in the white matter, demonstrating a match between symptoms and disruption of the studied networks.
Finally, in the third study, we focused on improving the structural connectivity data we provide with the Functionnectome. These data, generated by tractography, were better optimised for the structural-functional analysis of the Functionnectome. First, we improved the interface between grey matter and white matter fibres, allowing better integration of the two types of information. Second, we divided the fibres according to their type of connectivity (association, projection, or commissural), which reduced some of the negative effects of fibre crossing in the white matter, and facilitated the interpretation of the functional maps generated by the Functionnectome.
In conclusion, through the Functionnectome, we have created a new technical and conceptual framework to reintegrate white matter at the centre of our understanding of cognitive networks in the healthy brain. We hope that the demonstration of its effectiveness will encourage the community to pursue and extend this new approach to the functional study of the brain.
Key words: Human brain; Functional brain networks; Diffusion imaging and tractography; Connectome; White matter
Unravelling the fabric of the human mind: the brain-cognition space
Valentina Pacella, Victor Nozais, Lia Talozzi, Stephanie J Forkel, Michel Thiebaut de Schotten.
PrePrint Research Square. 2022-11-15.
Functionnectome as a framework to analyse the contribution of brain circuits to fMRI
Nozais V, Forkel SJ, Foulon C, Petit L, Thiebaut de Schotten M.
Commun Biol. .
The MRi-Share database: brain imaging in a cross-sectional cohort of 1870 university students
Ami Tsuchida, Alexandre Laurent, Fabrice Crivello, Laurent Petit, Marc Joliot, Antonietta Pepe, Naka Beguedou, Marie-Fateye Gueye, Violaine Verrecchia, Victor Nozais, Laure Zago, Emmanuel Mellet, Stéphanie Debette, Christophe Tzourio, Bernard Mazoyer.
Brain Struct Funct. 2021-07-20. 226(7) : 2057-2085.
3D Segmentation of Perivascular Spaces on T1-Weighted 3 Tesla MR Images With a Convolutional Autoencoder and a U-Shaped Neural Network
Philippe Boutinaud, Ami Tsuchida, Alexandre Laurent, Filipa Adonias, Zahra Hanifehlou, Victor Nozais, Violaine Verrecchia, Leonie Lampe, Junyi Zhang, Yi-Cheng Zhu, Christophe Tzourio, Bernard Mazoyer, Marc Joliot.
Front. Neuroinform.. 2021-06-18. 15
Deep Learning‐based Classification of Resting‐state fMRI Independent‐component Analysis
Victor Nozais, Philippe Boutinaud, Violaine Verrecchia, Marie-Fateye Gueye, Pierre-Yves Hervé, Christophe Tzourio, Bernard Mazoyer, Marc Joliot.
Functionnectome: a framework to analyse the contribution of brain circuits to fMRI
Victor Nozais, Stephanie J. Forkel, Chris Foulon, Laurent Petit, Michel Thiebaut de Schotten.
Preprint bioRxiv. 2021-01-08.
M. THIEBAUT DE SCHOTTEN Michel – Directeur de recherche, Université de Bordeaux – Directeur de thèse
M. MARGULIES Daniel – Directeur de recherche, Université Paris Cité – Rapporteur
M. LEEMANS Alexander – Associate Professor, University Medical Center Utrecht – Rapporteur
Mme CHANRAUD Sandra – Maîtresse de conférences, École Pratique des Hautes Études – Examinatrice
Mme VOLLE Emmanuelle – Chargée de recherche, Sorbonne Université – Examinatrice
M. TOURDIAS Thomas – Professeur des universités – praticien hospitalier, Université de Bordeaux – Examinateur
M. PETIT Laurent – Directeur de recherche, Université de Bordeaux – Invité