Jean-Baptiste Sibarita

Publications

• Author Correction: Arkitekt: streaming analysis and real-time workflows for microscopy
  Johannes Roos, Stéphane Bancelin, Tom Delaire, Alexander Wilhelmi, Florian Levet, Maren Engelhardt, Virgile Viasnoff, Rémi Galland, U. Valentin Nägerl, Jean-Baptiste Sibarita.
  Nat Methods. 2025-01-21.
  10.1038/s41592-025-02597-3
• Arkitekt: streaming analysis and real-time workflows for microscopy
  Johannes Roos, Stéphane Bancelin, Tom Delaire, Alexander Wilhelmi, Florian Levet, Maren Engelhardt, Virgile Viasnoff, Rémi Galland, U. Valentin Nägerl, Jean-Baptiste Sibarita.
  Nat Methods. 2024-09-18.
  10.1038/s41592-024-02404-5
• Protocol for matching protein localization to synapse morphology in primary rat neurons by correlative super-resolution microscopy
  Tiffany Cloâtre, Magali Mondin, Jean-Baptiste Sibarita, Florian Levet, Olivier Thoumine.
  STAR Protocols. 2024-09-01. 5(3) : 103160.
  10.1016/j.xpro.2024.103160
• Non-canonical interplay between glutamatergic NMDA and dopamine receptors shapes synaptogenesis
  Nathan Bénac, G. Ezequiel Saraceno, Corey Butler, Nahoko Kuga, Yuya Nishimura, Taiki Yokoi, Ping Su, Takuya Sasaki, Mar Petit-Pedrol, Rémi Galland, Vincent Studer, Fang Liu, Yuji Ikegaya, Jean-Baptiste Sibarita, Laurent Groc.
  Nat Commun. 2024-01-02. 15(1)
  10.1038/s41467-023-44301-z
• Multi-synaptic boutons are a feature of CA1 hippocampal connections in the stratum oriens
  Mark Rigby, Federico W. Grillo, Benjamin Compans, Guilherme Neves, Julia Gallinaro, Sophie Nashashibi, Sally Horton, Pedro M. Pereira Machado, Maria Alejandra Carbajal, Gema Vizcay-Barrena, Florian Levet, Jean-Baptiste Sibarita, Angus Kirkland, Roland A. Fleck, Claudia Clopath, Juan Burrone.
  Cell Reports. 2023-05-01. 42(5) : 112397.
  10.1016/j.celrep.2023.112397
• Nanoscale and functional heterogeneity of the hippocampal extracellular space
  Diego Grassi, Agata Idziak, Antony Lee, Ivo Calaresu, Jean-Baptiste Sibarita, Laurent Cognet, U. Valentin Nägerl, Laurent Groc.
  Cell Reports. 2023-05-01. 42(5) : 112478.
  10.1016/j.celrep.2023.112478
• PoCA: a software platform for point cloud data visualization and quantification
  Florian Levet, Jean-Baptiste Sibarita.
  Nat Methods. 2023-03-03.
  10.1038/s41592-023-01811-4
• A framework for evaluating the performance of SMLM cluster analysis algorithms
  Daniel J. Nieves, Jeremy A. Pike, Florian Levet, David J. Williamson, Mohammed Baragilly, Sandra Oloketuyi, Ario de Marco, Juliette Griffié, Daniel Sage, Edward A. K. Cohen, Jean-Baptiste Sibarita, Mike Heilemann, Dylan M. Owen.
  Nat Methods. 2023-02-01. 20(2) : 259-267.
  10.1038/s41592-022-01750-6
• EndophilinA-dependent coupling between activity-induced calcium influx and synaptic autophagy is disrupted by a Parkinson-risk mutation
  Adekunle T. Bademosi, Marianna Decet, Sabine Kuenen, Carles Calatayud, Jef Swerts, Sandra F. Gallego, Nils Schoovaerts, Spyridoula Karamanou, Nikolaos Louros, Ella Martin, Jean-Baptiste Sibarita, Katlijn Vints, Natalia V. Gounko, Frédéric A. Meunier, Anastassios Economou, Wim Versées, Frederic Rousseau, Joost Schymkowitz, Sandra-F. Soukup, Patrik Verstreken.
  Neuron. 2023-02-01.
  10.1016/j.neuron.2023.02.001
• Fyn nanoclustering requires switching to an open conformation and is enhanced by FTLD-Tau biomolecular condensates
  Ramón Martínez-Mármol, Christopher Small, Anmin Jiang, Tishila Palliyaguru, Tristan P. Wallis, Rachel S. Gormal, Jean-Baptiste Sibarita, Jürgen Götz, Frédéric A. Meunier.
  Mol Psychiatry. 2022-10-18. 28(2) : 946-962.
  10.1038/s41380-022-01825-y
• Single‐molecule imaging reveals Tau trapping at nanometer‐sized dynamic hot spots near the plasma membrane that persists after microtubule perturbation and cholesterol depletion
  Pranesh Padmanabhan, Andrew Kneynsberg, Esteban Cruz, Rumelo Amor, Jean‐Baptiste Sibarita, Jürgen Götz.
  The EMBO Journal. 2022-08-25. 41(19)
  10.15252/embj.2022111265
• Author Correction: Nanoscale regulation of Ca2+ dependent phase transitions and real-time dynamics of SAP97/hDLG
  Premchand Rajeev, Nivedita Singh, Adel Kechkar, Corey Butler, Narendrakumar Ramanan, Jean-Baptiste Sibarita, Mini Jose, Deepak Nair.
  Nat Commun. 2022-08-01. 13(1)
  10.1038/s41467-022-32251-x
• Nanoscale regulation of Ca2+ dependent phase transitions and real-time dynamics of SAP97/hDLG
  Premchand Rajeev, Nivedita Singh, Adel Kechkar, Cory Butler, Narendrakumar Ramanan, Jean-Baptiste Sibarita, Mini Jose, Deepak Nair.
  Nat Commun. 2022-07-22. 13(1)
  10.1038/s41467-022-31912-1
• MID3A: Microscopy Image Denoising meets Differentiable Data Augmentation
  Felix Fuentes-Hurtado, Tom Delaire, Florian Levet, Jean-Baptiste Sibarita, Virgile Viasnoff.
  2022 International Joint Conference on Neural Networks (IJCNN). 2022-07-18.
  10.1109/IJCNN55064.2022.9892954
• Automated high-speed 3D imaging of organoid cultures with multi-scale phenotypic quantification
  Anne Beghin, Gianluca Grenci, Geetika Sahni, Su Guo, Harini Rajendiran, Tom Delaire, Saburnisha Binte Mohamad Raffi, Damien Blanc, Richard de Mets, Hui Ting Ong, Xareni Galindo, Anais Monet, Vidhyalakshmi Acharya, Victor Racine, Florian Levet, Remi Galland, Jean-Baptiste Sibarita, Virgile Viasnoff.
  Nat Methods. 2022-06-13. 19(7) : 881-892.
  10.1038/s41592-022-01508-0
• Receptor tyrosine kinase MET ligand-interaction classified via machine learning from single-particle tracking data
  Sebastian Malkusch, Johanna V. Rahm, Marina S. Dietz, Mike Heilemann, Jean-Baptiste Sibarita, Jörn Lötsch.
  MBoC. 2022-05-15. 33(6)
  10.1091/mbc.e21-10-0496
• Multi-Dimensional Spectral Single Molecule Localization Microscopy
  Corey Butler, G Ezequiel Saraceno, Adel Kechkar, Nathan Bénac, Vincent Studer, Julien P. Dupuis, Laurent Groc, Rémi Galland, Jean-Baptiste Sibarita.
  Front. Bioinform.. 2022-03-04. 2
  10.3389/fbinf.2022.813494
• Molecular motion and tridimensional nanoscale localization of kindlin control integrin activation in focal adhesions.
  Thomas Orré, Adrien Joly, Zeynep Karatas, Birgit Kastberger, Clément Cabriel, Ralph T. Böttcher, Sandrine Lévêque-Fort, Jean-Baptiste Sibarita, Reinhard Fässler, Bernhard Wehrle-Haller, Olivier Rossier, Grégory Giannone.
  Nat Commun. 2021-05-25. 12(1)
  10.1038/s41467-021-23372-w
• NMDAR-dependent long-term depression is associated with increased short term plasticity through autophagy mediated loss of PSD-95
  Benjamin Compans, Come Camus, Emmanouela Kallergi, Silvia Sposini, Magalie Martineau, Corey Butler, Adel Kechkar, Remco V. Klaassen, Natacha Retailleau, Terrence J. Sejnowski, August B. Smit, Jean-Baptiste Sibarita, Thomas M. Bartol, David Perrais, Vassiliki Nikoletopoulou, Daniel Choquet, Eric Hosy.
  Nat Commun. 2021-05-14. 12(1)
  10.1038/s41467-021-23133-9
• CaMKII activation persistently segregates postsynaptic proteins via liquid phase separation
  Tomohisa Hosokawa, Pin-Wu Liu, Qixu Cai, Joana S. Ferreira, Florian Levet, Corey Butler, Jean-Baptiste Sibarita, Daniel Choquet, Laurent Groc, Eric Hosy, Mingjie Zhang, Yasunori Hayashi.
  Nat Neurosci. 2021-04-29.
  10.1038/s41593-021-00843-3
• Advanced imaging and labelling methods to decipher brain cell organization and function
  Daniel Choquet, Matthieu Sainlos, Jean-Baptiste Sibarita.
  Nat Rev Neurosci. 2021-03-12.
  10.1038/s41583-021-00441-z
• CaMKII activation triggers persistent formation and segregation of postsynaptic liquid phase
  Tomohisa Hosokawa, Pin-Wu Liu, Qixu Cai, Joana S. Ferreira, Florian Levet, Corey Butler, Jean-Baptiste Sibarita, Daniel Choquet, Laurent Groc, Eric Hosy, Mingjie Zhang, Yasunori Hayashi.
  . 2020-11-26.
  10.1101/2020.11.25.397091
• Distance-dependent regulation of NMDAR nanoscale organization along hippocampal neuron dendrites
  Joana S. Ferreira, Julien P. Dupuis, Blanka Kellermayer, Nathan Bénac, Constance Manso, Delphine Bouchet, Florian Levet, Corey Butler, Jean-Baptiste Sibarita, Laurent Groc.
  Proc Natl Acad Sci USA. 2020-09-14. : 201922477.
  10.1073/pnas.1922477117
• Amoeboid Swimming Is Propelled by Molecular Paddling in Lymphocytes
  Laurene Aoun, Alexander Farutin, Nicolas Garcia-Seyda, Paulin Nègre, Mohd Suhail Rizvi, Sham Tlili, Solene Song, Xuan Luo, Martine Biarnes-Pelicot, Rémi Galland, Jean-Baptiste Sibarita, Alphée Michelot, Claire Hivroz, Salima Rafai, Marie-Pierre Valignat, Chaouqi Misbah, Olivier Theodoly.
  Biophysical Journal. 2020-09-01. 119(6) : 1157-1177.
  10.1016/j.bpj.2020.07.033
• Nanoscale co-organization and coactivation of AMPAR, NMDAR, and mGluR at excitatory synapses
  Julia Goncalves, Tomas M. Bartol, Côme Camus, Florian Levet, Ana Paula Menegolla, Terrence J. Sejnowski, Jean-Baptiste Sibarita, Michel Vivaudou, Daniel Choquet, Eric Hosy.
  Proc Natl Acad Sci USA. 2020-06-08. : 201922563.
  10.1073/pnas.1922563117
• SpineJ: A software tool for quantitative analysis of nanoscale spine morphology
  Florian Levet, Jan Tønnesen, U. Valentin Nägerl, Jean-Baptiste Sibarita.
  Methods. 2020-03-01. 174 : 49-55.
  10.1016/j.ymeth.2020.01.020
• A Discrete Presynaptic Vesicle Cycle for Neuromodulator Receptors
  Damien Jullié, Miriam Stoeber, Jean-Baptiste Sibarita, Hanna L. Zieger, Thomas M. Bartol, Seksiri Arttamangkul, Terrence J. Sejnowski, Eric Hosy, Mark von Zastrow.
  Neuron. 2020-02-01. 105(4) : 663-677.e8.
  10.1016/j.neuron.2019.11.016
• Real-time nanoscale organization of amyloid precursor protein
  Shekhar Kedia, Pratyush Ramakrishna, Pallavi Rao Netrakanti, Mini Jose, Jean-Baptiste Sibarita, Suhita Nadkarni, Deepak Nair.
  Nanoscale. 2020-01-01. 12(15) : 8200-8215.
  10.1039/d0nr00052c
• A super-resolution platform for correlative live single-molecule imaging and STED microscopy
  V. V. G. Krishna Inavalli, Martin O. Lenz, Corey Butler, Julie Angibaud, Benjamin Compans, Florian Levet, Jan Tønnesen, Olivier Rossier, Gregory Giannone, Olivier Thoumine, Eric Hosy, Daniel Choquet, Jean-Baptiste Sibarita, U. Valentin Nägerl.
  Nat Methods. 2019-10-21.
  10.1038/s41592-019-0611-8
• SpineJ : A software tool for quantitative analysis of nanoscale spine morphology
  Florian Levet, Jan Tønnesen, Valentin Nägerl, Jean-Baptiste Sibarita.
  . 2019-09-10.
  10.1101/764548
• Transient Activations of Rac1 at the Lamellipodium Tip Trigger Membrane Protrusion.
  Amine Mehidi, Olivier Rossier, Matthias Schaks, Anaël Chazeau, Fabien Binamé, Amanda Remorino, Mathieu Coppey, Zeynep Karatas, Jean-Baptiste Sibarita, Klemens Rottner, Violaine Moreau, Grégory Giannone.
  Current Biology. 2019-09-01. 29(17) : 2852-2866.e5.
  10.1016/j.cub.2019.07.035
• Exchange Dynamics of Dynamin Measured in Living Cells During Endocytic Vesicle Formation
  Léa Claverie, Morgane Rosendale, Patrice Maschalchi, Corey Butler, Natacha Retailleau, Jean-Baptiste Sibarita, Daniel Choquet, David Perrais.
  Microsc Microanal. 2019-08-01. 25(S2) : 1240-1241.
  10.1017/S1431927619006937
• A tessellation-based colocalization analysis approach for single-molecule localization microscopy
  Florian Levet, Guillaume Julien, Rémi Galland, Corey Butler, Anne Beghin, Anaël Chazeau, Philipp Hoess, Jonas Ries, Grégory Giannone, Jean-Baptiste Sibarita.
  Nat Commun. 2019-05-30. 10(1)
  10.1038/s41467-019-10007-4
• Three-dimensional electron microscopy analysis of ndc10-1 mutant reveals an aberrant organization of the mitotic spindle and spindle pole body defects in Saccharomyces cerevisiae
  Romao M, Tanaka K, Sibarita JB, Ly-Hartig NT, Tanaka TU, Antony C..
  . 2008 Jul. 163(1) : 18-28.
  10.1016/j.jsb.2008.03.015
• Myosin va mediates docking of secretory granules at the plasma membrane
  Desnos C, Huet S, Fanget I, Chapuis C, Böttiger C, Racine V, Sibarita JB, Henry JP, Darchen F.
  J Neurosci. 2007-09-26. 27(39) : 10636-45.
  27/39/10636 [pii]10.1523/JNEUROSCI.1228-07.2007
• Surface trafficking of neurotransmitter receptor: comparison between single-molecule/quantum dot strategies
  Groc L, Lafourcade M, Heine M, Renner M, Racine V, Sibarita JB, Lounis B, Choquet D, Cognet L..
  J Neurosci.. 2007 Nov 14. 27(46) : 12433-7.
  27/46/12433 [pii]10.1523/JNEUROSCI.3349-07.2007
• The actin-based motor protein myosin II regulates MHC class II trafficking and BCR-driven antigen presentation
  Vascotto F, Lankar D, Faure-André G, Vargas P, Diaz J, Le Roux D, Yuseff MI, Sibarita JB, Boes M, Raposo G, Mougneau E, Glaichenhaus N, Bonnerot C, Manoury B, Lennon-Duménil AM..
  J Cell Biol.. 2007 Mar 26. 176(7) : 1007-19.
  jcb.200611147 [pii]10.1083/jcb.200611147
• The human Nup107-160 nuclear pore subcomplex contributes to proper kinetochore functions
  Zuccolo M, Alves A, Galy V, Bolhy S, Formstecher E, Racine V, Sibarita JB, Fukagawa T, Shiekhattar R, Yen T, Doye V..
  EMBO J.. 2007 Apr 4. 26(7) : 1853-64.
  7601642 [pii]10.1038/sj.emboj.7601642
• A role for the Rab6A’ GTPase in the inactivation of the Mad2-spindle checkpoint
  Miserey-Lenkei S, Couëdel-Courteille A, Del Nery E, Bardin S, Piel M, Racine V, Sibarita JB, Perez F, Bornens M, Goud B..
  EMBO J.. 2006 Jan 25. 25(2) : 278-89.
  7600929 [pii]10.1038/sj.emboj.7600929
• Anisotropy of cell adhesive microenvironment governs cell internal organization and orientation of polarity
  Théry M(1), Racine V, Piel M, Pépin A, Dimitrov A, Chen Y, Sibarita JB, Bornens M..
  Proc Natl Acad Sci U S A.. 2006 Dec 26. 103(52) : 19771-6.
  0609267103 [pii]10.1073/pnas.0609267103
• Pom1 kinase links division plane position to cell polarity by regulating Mid1p cortical distribution
  Celton-Morizur S, Racine V, Sibarita JB, Paoletti A..
  J Cell Sci.. 2006 Nov 15. 119(Pt 22) : 4710-8.
  jcs.03261 [pii]10.1242/jcs.03261
• The cellular pathway of CD1e in immature and maturing dendritic cells
  Angénieux C, Fraisier V, Maître B, Racine V, van der Wel N, Fricker D, Proamer F, Sachse M, Cazenave JP, Peters P, Goud B, Hanau D, Sibarita JB, Salamero J, de la Salle H..
  Traffic. 2005 Apr. 6(4) : 286-302.
  TRA272 [pii]10.1111/j.1600-0854.2005.00272.x
• Ankyrin G restricts ion channel diffusion at the axonal initial segment before the establishment of the diffusion barrier
  Brachet A, Leterrier C, Irondelle M, Fache MP, Racine V, Sibarita JB, Choquet D, Dargent B..
  J Cell Biol.. 2010 Oct 18. 191:(2) : 383-95.
  jcb.201003042 [pii]10.1083/jcb.201003042
• Inaugural Article: Fast live simultaneous multiwavelength four-dimensional optical microscopy
  .
  . .
  1004037107 [pii] 10.1073/pnas.1004037107
• AP-1 and KIF13A coordinate endosomal sorting and positioning during melanosome biogenesis
  .
  . .
  jcb.200907122 [pii] 10.1083/jcb.200907122
• Activity-dependent tuning of inhibitory neurotransmission based on GABAAR diffusion dynamics
  .
  Neuron.. 2009-06-11. 62(5) : 670-82.
  10.1016/j.neuron.2009.04.023.
• The gene responsible for Dyggve-Melchior-Clausen syndrome encodes a novel peripheral membrane protein dynamically associated with the Golgi apparatus
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  . .
  ddn371 [pii] 10.1093/hmg/ddn371
• The extracellular matrix guides the orientation of the cell division axis
  Théry M, Racine V, Pépin A, Piel M, Chen Y, Sibarita JB, Bornens M..
  Nat Cell Biol.. 2005-10. 7(10) : 947-53.
  ncb1307 [pii]10.1038/ncb1307
• TI-VAMP/VAMP7 is required for optimal phagocytosis of opsonised particles in macrophages
  Braun V, Fraisier V, Raposo G, Hurbain I, Sibarita JB, Chavrier P, Galli T, Niedergang F.
  EMBO J.. 2004-10. 23(21) : 4166-76.
  7600427 [pii]10.1038/sj.emboj.7600427
• The entire Nup107-160 complex, including three new members, is targeted as one entity to kinetochores in mitosis
  Loïodice I, Alves A, Rabut G, Van Overbeek M, Ellenberg J, Sibarita JB, Doye V..
  Mol Biol Cell.. 2004-07-15. 15(7) : 3333-44.
  10.1091/mbc.E03-12-0878E03-12-0878 [pii]
• Microtubule release from the centrosome in migrating cells
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  . 002-12-09.
  10.1083/jcb.200207076jcb.200207076 [pii]
• Relationship between cell migration and cell cycle during the initiation of epithelial to fibroblastoid transition
  Bonneton C, Sibarita JB, Thiery JP..
  Cell Motil Cytoskeleton.. 1999. 43(4) : 288-95.
  10.1002/(SICI)1097-0169(1999)43:4<288::AID-CM2>3.0.CO;2-Y
• Super-resolution fight club: assessment of 2D and 3D single-molecule localization microscopy software
  Daniel Sage, Thanh-An Pham, Hazen Babcock, Tomas Lukes, Thomas Pengo, Jerry Chao, Ramraj Velmurugan, Alex Herbert, Anurag Agrawal, Silvia Colabrese, Ann Wheeler, Anna Archetti, Bernd Rieger, Raimund Ober, Guy M. Hagen, Jean-Baptiste Sibarita, Jonas Ries, Ricardo Henriques, Michael Unser, Seamus Holden.
  Nat Methods. 2019-04-08. 16(5) : 387-395.
  10.1038/s41592-019-0364-4
• Author Correction: Single molecule localisation microscopy reveals how HIV-1 Gag proteins sense membrane virus assembly sites in living host CD4 T cells
  Charlotte Floderer, Jean-Baptiste Masson, Elise Boilley, Sonia Georgeault, Peggy Merida, Mohamed El Beheiry, Maxime Dahan, Philippe Roingeard, Jean-Baptiste Sibarita, Cyril Favard, Delphine Muriaux.
  Sci Rep. 2018-11-22. 8(1)
  10.1038/s41598-018-35954-8
• Single molecule localisation microscopy reveals how HIV-1 Gag proteins sense membrane virus assembly sites in living host CD4 T cells
  Charlotte Floderer, Jean-Baptiste Masson, Elise Boilley, Sonia Georgeault, Peggy Merida, Mohamed El Beheiry, Maxime Dahan, Philippe Roingeard, Jean-Baptiste Sibarita, Cyril Favard, Delphine Muriaux.
  Sci Rep. 2018-11-02. 8(1)
  10.1038/s41598-018-34536-y
• Bacterial cell wall nanoimaging by autoblanking microscopy
  Kevin Floc’h, Françoise Lacroix, Liliana Barbieri, Pascale Servant, Remi Galland, Corey Butler, Jean-Baptiste Sibarita, Dominique Bourgeois, Joanna Timmins.
  Sci Rep. 2018-09-19. 8(1)
  10.1038/s41598-018-32335-z
• Bacterial cell wall nanoimaging by autoblinking microscopy
  Kevin Floc’h, Françoise Lacroix, Liliana Barbieri, Pascale Servant, Remi Galland, Corey Butler, Jean-Baptiste Sibarita, Dominique Bourgeois, Joanna Timmins.
  Sci Rep. 2018-09-19. 8(1)
  10.1038/s41598-018-32335-z
• Phosphatidylserine and GTPase activation control Cdc42 nanoclustering to counter dissipative diffusion
  Elodie Sartorel, Caner Ünlü, Mini Jose, Aurélie Massoni-Laporte, Julien Meca, Jean-Baptiste Sibarita, Derek McCusker.
  MBoC. 2018-06-01. 29(11) : 1299-1310.
  10.1091/mbc.E18-01-0051
• Catalytic activation of beta-arrestin by GPCRs
  Kelsie Eichel, Damien Jullié, Benjamin Barsi-Rhyne, Naomi R. Latorraca, Matthieu Masureel, Jean-Baptiste Sibarita, Ron O. Dror, Mark von Zastrow.
  Nature. 2018-05-01. 557(7705) : 381-386.
  10.1038/s41586-018-0079-1
• Live single molecule microscopy of HIV-1 assembly in host T cells reveals a spatio-temporal effect of the viral genome.
  Charlotte Floderer, Jean-Baptiste Masson, Elise Boiley, Sonia Georgeault, Peggy Merida, Mohamed El Beheiry, Maxime Dahan, Philippe Roigeard, Jean-Baptiste Sibarita, Cyril Favard, Delphine Muriaux.
  . 2018-02-19.
  10.1101/267930
• Localization-based super-resolution imaging meets high-content screening
  Anne Beghin, Adel Kechkar, Corey Butler, Florian Levet, Marine Cabillic, Olivier Rossier, Gregory Giannone, Rémi Galland, Daniel Choquet, Jean-Baptiste Sibarita.
  Nat Meth. 2017-10-30. 14(12) : 1184-1190.
  10.1038/nmeth.4486
• Nanoscale organization of synaptic adhesion proteins revealed by single-molecule localization microscopy
  Ingrid Chamma, Florian Levet, Jean-Baptiste Sibarita, Matthieu Sainlos, Olivier Thoumine.
  Neurophoton. 2016-11-03. 3(4) : 041810.
  10.1117/1.NPh.3.4.041810
• Hunting Down HIV-1 Gag Proteins at the Plasma Membrane of Human T Lymphocytes
  Charlotte Mariani-Floderer, Jean-Baptiste Sibarita, Cyril Favard, Delphine M. Muriaux.
  AIDS Research and Human Retroviruses. 2016-07-01. 32(7) : 658-659.
  10.1089/aid.2016.0052
• Mapping the dynamics and nanoscale organization of synaptic adhesion proteins using monomeric streptavidin.
  Ingrid Chamma, Mathieu Letellier, Corey Butler, Béatrice Tessier, Kok-Hong Lim, Isabel Gauthereau, Daniel Choquet, Jean-Baptiste Sibarita, Sheldon Park, Matthieu Sainlos, Olivier Thoumine.
  Nat Comms. 2016-03-16. 7 : 10773.
  10.1038/ncomms10773
• A quantitative imaging-based screen reveals the exocyst as a network hub connecting endocytosis and exocytosis
  Mini Jose, Sylvain Tollis, Deepak Nair, Romain Mitteau, Christophe Velours, Aurelie Massoni-Laporte, Anne Royou, Jean-Baptiste Sibarita, Derek McCusker.
  MBoC. 2015-07-01. 26(13) : 2519-2534.
  10.1091/mbc.E14-11-1527
• Two-tiered coupling between flowing actin and immobilized N-cadherin/catenin complexes in neuronal growth cones
  Mikael Garcia, Cécile Leduc, Matthieu Lagardère, Amélie Argento, Jean-Baptiste Sibarita, Olivier Thoumine.
  Proc Natl Acad Sci USA. 2015-05-18. 112(22) : 6997-7002.
  10.1073/pnas.1423455112
• Control of autophagosome axonal retrograde flux by presynaptic activity unveiled using botulinum neurotoxin type a
  Tong Wang, Sally Martin, Andreas Papadopulos, Callista B. Harper, Timur A. Mavlyutov, Dhevahi Niranjan, Nick R. Glass, Justin J. Cooper-White, Jean-Baptiste Sibarita, Daniel Choquet, Bazbek Davletov, Frédéric A. Meunier.
  J. Neurosci.. 2015-04-15. 35(15) : 6179-6194.
  10.1523/JNEUROSCI.3757-14.2015
• Synaptic recruitment of gephyrin regulates surface GABAA receptor dynamics for the expression of inhibitory LTP
  Enrica Maria Petrini, Tiziana Ravasenga, Torben J. Hausrat, Giuliano Iurilli, Umberto Olcese, Victor Racine, Jean-Baptiste Sibarita, Tija C. Jacob, Stephen J. Moss, Fabio Benfenati, Paolo Medini, Matthias Kneussel, Andrea Barberis.
  Nat Commun. 2014-06-04. 5(1)
  10.1038/ncomms4921
• Organization and dynamics of AMPA receptors inside synapses—nano-organization of AMPA receptors and main synaptic scaffolding proteins revealed by super-resolution imaging
  Eric Hosy, Corey Butler, Jean-Baptiste Sibarita.
  Current Opinion in Chemical Biology. 2014-06-01. 20 : 120-126.
  https://www.bordeaux-neurocampus.fr/2173
• Synaptic Control of Secretory Trafficking in Dendrites
  Cyril Hanus, Lisa Kochen, Susanne tom Dieck, Victor Racine, Jean-Baptiste Sibarita, Erin M. Schuman, Michael D. Ehlers.
  Cell Reports. 2014-06-01. 7(6) : 1771-1778.
  10.1016/j.celrep.2014.05.028
• High-density single-particle tracking: quantifying molecule organization and dynamics at the nanoscale
  Jean-Baptiste Sibarita.
  Histochem Cell Biol. 2014-03-27. 141(6) : 587-595.
  10.1007/s00418-014-1214-1
• Imaging of molecular surface dynamics in brain slices using single-particle tracking
  B. Biermann, S. Sokoll, J. Klueva, M. Missler, J. S. Wiegert, J. -B. Sibarita, M. Heine.
  Nat Commun. 2014-01-16. 5(1)
  10.1038/ncomms4024
• C11ORF24 Is a Novel Type I Membrane Protein That Cycles between the Golgi Apparatus and the Plasma Membrane in Rab6-Positive Vesicles
  Vincent Fraisier, Amal Kasri, Stéphanie Miserey-Lenkei, Jean-Baptiste Sibarita, Deepak Nair, Adeline Mayeux, Sabine Bardin, Yusuke Toyoda, Ina Poser, Andrei Poznyakovskiy, Bruno Goud, Anthony A. Hyman, Ariane Dimitrov.
  PLoS ONE. 2013-12-02. 8(12) : e82223.
  10.1371/journal.pone.0082223
• Identification and super-resolution imaging of ligand-activated receptor dimers in live cells
  Pascale Winckler, Lydia Lartigue, Gregory Giannone, Francesca De Giorgi, François Ichas, Jean-Baptiste Sibarita, Brahim Lounis, Laurent Cognet.
  Sci Rep. 2013-08-08. 3(1)
  10.1038/srep02387
• Super-Resolution Imaging Reveals That AMPA Receptors Inside Synapses Are Dynamically Organized in Nanodomains Regulated by PSD95
  D. Nair, E. Hosy, J. D. Petersen, A. Constals, G. Giannone, D. Choquet, J.-B. Sibarita.
  Journal of Neuroscience. 2013-08-07. 33(32)
  10.1523/JNEUROSCI.2381-12.2013
• Super-Resolution Imaging Reveals That AMPA Receptors Inside Synapses Are Dynamically Organized in Nanodomains Regulated by PSD95
  D. Nair, E. Hosy, J. D. Petersen, A. Constals, G. Giannone, D. Choquet, J.-B. Sibarita.
  Journal of Neuroscience. 2013-08-07. 33(32) : 13204-13224.
  10.1523/JNEUROSCI.2381-12.2013
• Super-Resolution Imaging Reveals That AMPA Receptors Inside Synapses Are Dynamically Organized in Nanodomains Regulated by PSD95
  D. Nair, E. Hosy, J. D. Petersen, A. Constals, G. Giannone, D. Choquet, J.-B. Sibarita.
  33. 2013-08-07. 33 : 13204-13224.
  10.1523/JNEUROSCI.2381-12.2013
• mSYD1A, a Mammalian Synapse-Defective-1 Protein, Regulates Synaptogenic Signaling and Vesicle Docking
  Corinna Wentzel, Julia E. Sommer, Ramya Nair, Adeline Stiefvater, Jean-Baptiste Sibarita, Peter Scheiffele.
  Neuron. 2013-06-01. 78(6) : 1012-1023.
  10.1016/j.neuron.2013.05.010
• Real-time analysis and visualization for single-molecule based super-resolution microscopy
  Adel Kechkar, Deepak Nair, Mike Heilemann, Daniel Choquet, Jean-Baptiste Sibarita.
  PLoS ONE. 2013-04-30. 8(4) : e62918.
  10.1371/journal.pone.0062918
• Robust polarity establishment occurs via an endocytosis-based cortical corralling mechanism
  Mini Jose, Sylvain Tollis, Deepak Nair, Jean-Baptiste Sibarita, Derek McCusker.
  J Cell Biol. 2013-02-11. 200(4) : 407-418.
  10.1083/jcb.201206081
• Targeting, resolving and quantifying cellular structures by single-molecule localization microscopy
  Jean-Baptiste Sibarita, Mike Heilemann.
  EMBO Rep. 2012-11-13. 13(12) : 1043-1045.
  10.1038/embor.2012.177
• Heterogeneity of AMPA receptor trafficking and molecular interactions revealed by superresolution analysis of live cell imaging
  N. Hoze, D. Nair, E. Hosy, C. Sieben, S. Manley, A. Herrmann, J.-B. Sibarita, D. Choquet, D. Holcman.
  Proceedings of the National Academy of Sciences. 2012-10-03. 109(42)
  10.1073/pnas.1204589109
• Heterogeneity of AMPA receptor trafficking and molecular interactions revealed by superresolution analysis of live cell imaging
  N. Hoze, D. Nair, E. Hosy, C. Sieben, S. Manley, A. Herrmann, J.-B. Sibarita, D. Choquet, D. Holcman.
  Proceedings of the National Academy of Sciences. 2012-10-03. 109(42) : 17052-17057.
  10.1073/pnas.1204589109
• Heterogeneity of AMPA receptor trafficking and molecular interactions revealed by superresolution analysis of live cell imaging
  N. Hoze, D. Nair, E. Hosy, C. Sieben, S. Manley, A. Herrmann, J.-B. Sibarita, D. Choquet, D. Holcman.
  109. 2012-10-03. 109 : 17052-17057.
  10.1073/pnas.1204589109
• TNF-alpha influences the lateral dynamics of TNF receptor I in living cells
  Meike Heidbreder, Christin Zander, Sebastian Malkusch, Darius Widera, Barbara Kaltschmidt, Christian Kaltschmidt, Deepak Nair, Daniel Choquet, Jean-Baptiste Sibarita, Mike Heilemann.
  Biochimica et Biophysica Acta (BBA) - Molecular Cell Research. 2012-10-01. 1823(10) : 1984-1989.
  10.1016/j.bbamcr.2012.06.026
• Unified quantitative model of AMPA receptor trafficking at synapses
  K. Czondor, M. Mondin, M. Garcia, M. Heine, R. Frischknecht, D. Choquet, J.-B. Sibarita, O. R. Thoumine.
  Proceedings of the National Academy of Sciences. 2012-02-13. 109(9) : 3522-3527.
  10.1073/pnas.1109818109
• Wavelet analysis for single molecule localization microscopy
  I. Izeddin, J. Boulanger, V. Racine, C.G. Specht, A. Kechkar, D. Nair, A. Triller, D. Choquet, M. Dahan, J.B. Sibarita.
  Opt. Express. 2012-01-17. 20(3) : 2081.
  10.1364/OE.20.002081
• Patch-based nonlocal functional for denoising fluorescence microscopy image sequences
  J. Boulanger, C. Kervrann, P. Bouthemy, P. Elbau, J.-B. Sibarita, J. Salamero.
  IEEE Trans. Med. Imaging. 2010-02-01. 29(2) : 442-454.
  10.1109/TMI.2009.2033991
• The interaction of IQGAP1 with the exocyst complex is required for tumor cell invasion downstream of Cdc42 and RhoA
  Sakurai-Yageta M, Recchi C, Le Dez G, Sibarita JB, Daviet L, Camonis J, D'Souza-Schorey C, Chavrier P..
  J Cell Biol.. 2008 Jun 16. 181(6) : 985-98.
  jcb.200709076 [pii]10.1083/jcb.200709076
• Visualization and quantification of vesicle trafficking on a three-dimensional cytoskeleton network in living cells
  Racine V, Sachse M, Salamero J, Fraisier V, Trubuil A, Sibarita JB..
  J Microsc.. 2007 Mar. 225(Pt 3) : 214-28.
  JMI1723 [pii]10.1111/j.1365-2818.2007.01723.x
• Image restoration in X-ray microscopy: PSF determination and biological applications
  J. Lehr, J.-B. Sibarita, J.-M. Chassery.
  IEEE Trans. on Image Process.. 1998-01-01. 7(2) : 258-263.
  10.1109/83.661006