{"id":115810,"date":"2022-01-07T08:09:31","date_gmt":"2022-01-07T07:09:31","guid":{"rendered":"https:\/\/www.bordeaux-neurocampus.fr\/?p=115810"},"modified":"2022-01-07T17:23:21","modified_gmt":"2022-01-07T16:23:21","slug":"single-cell-profiling-and-analysis-in-neuroscience","status":"publish","type":"post","link":"https:\/\/www.bordeaux-neurocampus.fr\/en\/single-cell-profiling-and-analysis-in-neuroscience\/","title":{"rendered":"Cajal course: Single cell profiling and analysis in neuroscience"},"content":{"rendered":"<section class=\"has_eae_slider elementor-section elementor-top-section elementor-element elementor-element-603a85db elementor-section-boxed elementor-section-height-default elementor-section-height-default\" data-id=\"603a85db\" data-element_type=\"section\">\n<div class=\"elementor-container elementor-column-gap-default\">\n<div class=\"elementor-row\">\n<div class=\"has_eae_slider elementor-column elementor-col-50 elementor-top-column elementor-element elementor-element-727e32a\" data-id=\"727e32a\" data-element_type=\"column\">\n<div class=\"elementor-column-wrap elementor-element-populated\">\n<div class=\"elementor-widget-wrap\">\n<div class=\"elementor-element elementor-element-e316f00 elementor-widget elementor-widget-heading\" data-id=\"e316f00\" data-element_type=\"widget\" data-widget_type=\"heading.default\">\n<div class=\"elementor-widget-container\">\n<h3 class=\"elementor-heading-title elementor-size-default\">Course overview<\/h3>\n<\/div>\n<\/div>\n<div class=\"elementor-element elementor-element-20fa58bc elementor-widget elementor-widget-text-editor\" data-id=\"20fa58bc\" data-element_type=\"widget\" data-widget_type=\"text-editor.default\">\n<div class=\"elementor-widget-container\">\n<div class=\"elementor-text-editor elementor-clearfix\">\n<div title=\"Page 7\">\n<p>Understanding the cellular complexity of the nervous system is a key endeavor in the pursuit to reveal the biological underpinnings of brain function. The recent methodological development of high-throughput single-cell profiling techniques and analysis has emerged as an essential tool for characterizing cellular diversity in the brain offering data sets that hold the promise of being complete, accurate and permanent. This course will teach central ideas, methods, and practices of single cell profiling and hands-on computational analysis through a combination of lectures from prominent international faculty speakers, experimental projects and data analysis workshops.<\/p>\n<p>The course will include practical training in small groups of students on single cell methodologies and computational and statistical data analysis needed to interpret large data sets. This integration of data analysis with hands-on experiments will allow the students to gain knowledge in technical performance as well as biological interpretation of single cell data sets.<\/p>\n<p>This advanced course is aimed for graduate students from a variety of disciplines, including neuroscience, physics, computer science and applied mathematics. Students are expected to have a keen interest and basic background in neurobiology, and to fully benefit from the data analysis it is expected that the students have at least a basic knowledge in programming.<\/p>\n<p><strong>In partnership with the Bordeaux Imaging Center.<\/strong><\/p>\n<h3>Course directors<\/h3>\n<div class=\"has_eae_slider elementor-column elementor-col-25 elementor-inner-column elementor-element elementor-element-4e086e57\" data-id=\"4e086e57\" data-element_type=\"column\">\n<div class=\"elementor-column-wrap elementor-element-populated\">\n<div class=\"elementor-widget-wrap\">\n<div class=\"elementor-element elementor-element-599097e2 elementor-round elementor-position-top elementor-vertical-align-top elementor-widget elementor-widget-image-box\" data-id=\"599097e2\" data-element_type=\"widget\" data-widget_type=\"image-box.default\">\n<div class=\"elementor-widget-container\">\n<div class=\"elementor-image-box-wrapper\">\n<div class=\"elementor-image-box-content\">\n<p class=\"elementor-image-box-title\"><a href=\"http:\/\/www.hjerling-leffler-lab.org\/\"><strong> Jens Hjerling-Leffler<\/strong><\/a><br \/>\nCourse Director<br \/>\nDepartment of Medical Biochemistry and Biophysics,\u00a0 Karolinska Institute,\u00a0 Sweden<\/p>\n<\/div>\n<\/div>\n<\/div>\n<\/div>\n<\/div>\n<\/div>\n<\/div>\n<div class=\"has_eae_slider elementor-column elementor-col-25 elementor-inner-column elementor-element elementor-element-7a327015\" data-id=\"7a327015\" data-element_type=\"column\">\n<div class=\"elementor-column-wrap elementor-element-populated\">\n<div class=\"elementor-widget-wrap\">\n<div class=\"elementor-element elementor-element-21536aa8 elementor-round elementor-position-top elementor-vertical-align-top elementor-widget elementor-widget-image-box\" data-id=\"21536aa8\" data-element_type=\"widget\" data-widget_type=\"image-box.default\">\n<div class=\"elementor-widget-container\">\n<div class=\"elementor-image-box-wrapper\">\n<p><a href=\"http:\/\/pklab.med.harvard.edu\/\" target=\"_blank\" rel=\"noopener\"><strong>Peter Kharchenko<\/strong><\/a><br \/>\nCo-Director<br \/>\nBiomedical Informatics, Harvard Medical School, USA<\/p>\n<\/div>\n<\/div>\n<\/div>\n<\/div>\n<\/div>\n<\/div>\n<div class=\"elementor-column-wrap elementor-element-populated\">\n<div class=\"elementor-widget-wrap\">\n<div class=\"elementor-element elementor-element-20df4cb elementor-round elementor-position-top elementor-vertical-align-top elementor-widget elementor-widget-image-box\" data-id=\"20df4cb\" data-element_type=\"widget\" data-widget_type=\"image-box.default\">\n<div class=\"elementor-widget-container\">\n<div class=\"elementor-image-box-wrapper\">\n<div class=\"elementor-image-box-content\">\n<p class=\"elementor-image-box-title\"><a href=\"https:\/\/cts562.uca.es\/orcid\" target=\"_blank\" rel=\"noopener\"><strong>Ana Munoz-Manchado<\/strong><\/a><br \/>\nCo-Director<br \/>\nUniversity of C\u00e1diz\/INiBICA, Spain<\/p>\n<\/div>\n<\/div>\n<\/div>\n<\/div>\n<\/div>\n<\/div>\n<div class=\"has_eae_slider elementor-column elementor-col-25 elementor-inner-column elementor-element elementor-element-4aa481a3\" data-id=\"4aa481a3\" data-element_type=\"column\">\n<div class=\"elementor-column-wrap elementor-element-populated\">\n<div class=\"elementor-widget-wrap\">\n<div class=\"elementor-element elementor-element-63484096 elementor-round elementor-position-top elementor-vertical-align-top elementor-widget elementor-widget-image-box\" data-id=\"63484096\" data-element_type=\"widget\" data-widget_type=\"image-box.default\">\n<div class=\"elementor-widget-container\">\n<div class=\"elementor-image-box-wrapper\">\n<div class=\"elementor-image-box-content\">\n<p><a href=\"https:\/\/www.bordeaux-neurocampus.fr\/en\/staff\/alexandre-favereaux\/\" target=\"_blank\" rel=\"noopener\"><strong>Alexandre Favereaux<\/strong><\/a><br \/>\nCo-Director<br \/>\nCNRS \u2013 IINS, University of Bordeaux, France<\/p>\n<\/div>\n<\/div>\n<\/div>\n<\/div>\n<\/div>\n<\/div>\n<\/div>\n<\/div>\n<h2>Keynote Speakers<\/h2>\n<p><a href=\"https:\/\/www.ucl.ac.uk\/cortexlab\/\" target=\"_blank\" rel=\"noopener\"><strong>Kenneth Harris<\/strong><\/a>\u00a0\u2013 UCL Queen Square Institute of Neurology, UK<br \/>\n<a href=\"https:\/\/alleninstitute.org\/what-we-do\/brain-science\/about\/team\/staff-profiles\/ed-lein\/\" target=\"_blank\" rel=\"noopener\"><strong>Ed Lein<\/strong><\/a>\u00a0\u2013 Allen Institute for Brain Science, USA<br \/>\n<strong><a href=\"https:\/\/www.ebi.ac.uk\/research\/marioni\" target=\"_blank\" rel=\"noopener\">John Marioni<\/a><\/strong>\u00a0\u2013 European Bioinformatics Institute (EMBL-EBI), UK<br \/>\n<a href=\"http:\/\/martin-villalba-lab.github.io\/\" target=\"_blank\" rel=\"noopener\"><strong>Ana Martin-Villalba<\/strong><\/a>\u00a0\u2013 University of Heidelberg, Germany<br \/>\n<strong><a href=\"https:\/\/satijalab.org\/\" target=\"_blank\" rel=\"noopener\">Rahul Satija<\/a><\/strong>\u00a0\u2013 New York Genome Center (NYGC), USA<br \/>\n<strong><a href=\"http:\/\/genome-tech.ucsd.edu\/ZhangLab\/\" target=\"_blank\" rel=\"noopener\">Kun Zhang<\/a><\/strong>\u00a0\u2013 Department of Bioengineering, University of California, USA<\/p>\n<\/div>\n<\/div>\n<\/div>\n<\/div>\n<\/div>\n<\/div>\n<\/div>\n<\/div>\n<\/section>\n<section class=\"has_eae_slider elementor-section elementor-top-section elementor-element elementor-element-5c83c58b elementor-section-stretched elementor-section-boxed elementor-section-height-default elementor-section-height-default\" data-id=\"5c83c58b\" data-element_type=\"section\" data-settings=\"{&quot;stretch_section&quot;:&quot;section-stretched&quot;,&quot;background_background&quot;:&quot;gradient&quot;}\">\n<div class=\"elementor-container elementor-column-gap-default\">\n<div class=\"elementor-row\">\n<div class=\"has_eae_slider elementor-column elementor-col-100 elementor-top-column elementor-element elementor-element-43c6d26c\" data-id=\"43c6d26c\" data-element_type=\"column\" data-settings=\"{&quot;background_background&quot;:&quot;classic&quot;}\">\n<div class=\"elementor-column-wrap elementor-element-populated\">\n<div class=\"elementor-widget-wrap\">\n<section class=\"has_eae_slider elementor-section elementor-inner-section elementor-element elementor-element-41014850 elementor-section-boxed elementor-section-height-default elementor-section-height-default\" data-id=\"41014850\" data-element_type=\"section\">\n<div class=\"elementor-container elementor-column-gap-default\">\n<div class=\"elementor-row\">\n<div class=\"has_eae_slider elementor-column elementor-col-25 elementor-inner-column elementor-element elementor-element-4aa481a3\" data-id=\"4aa481a3\" data-element_type=\"column\">\n<div class=\"elementor-column-wrap elementor-element-populated\">\n<div class=\"elementor-widget-wrap\">\n<div class=\"elementor-element elementor-element-747d60a8 elementor-widget elementor-widget-text-editor\" data-id=\"747d60a8\" data-element_type=\"widget\" data-widget_type=\"text-editor.default\">\n<div class=\"elementor-widget-container\">\n<div class=\"elementor-text-editor elementor-clearfix\">\n<div title=\"Page 7\">\n<div>\n<div>\n<div>\n<div title=\"Page 7\">\n<div>\n<div>\n<div>\n<h3>More details \/ Registration<\/h3>\n<p><a href=\"http:\/\/cajal-training.org\/on-site\/scpan\/\">http:\/\/cajal-training.org\/on-site\/scpan\/<\/a><\/p>\n<\/div>\n<\/div>\n<\/div>\n<\/div>\n<\/div>\n<\/div>\n<\/div>\n<\/div>\n<\/div>\n<\/div>\n<\/div>\n<\/div>\n<\/div>\n<\/div>\n<\/div>\n<\/div>\n<\/section>\n<\/div>\n<\/div>\n<\/div>\n<\/div>\n<\/div>\n<\/section>\n","protected":false},"excerpt":{"rendered":"<p>Registrations are open before January 17th. <\/p>\n","protected":false},"author":108,"featured_media":115760,"comment_status":"closed","ping_status":"closed","sticky":false,"template":"","format":"standard","meta":{"footnotes":""},"categories":[86],"tags":[],"class_list":["post-115810","post","type-post","status-publish","format-standard","has-post-thumbnail","hentry","category-trainings"],"_links":{"self":[{"href":"https:\/\/www.bordeaux-neurocampus.fr\/en\/wp-json\/wp\/v2\/posts\/115810","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/www.bordeaux-neurocampus.fr\/en\/wp-json\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/www.bordeaux-neurocampus.fr\/en\/wp-json\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/www.bordeaux-neurocampus.fr\/en\/wp-json\/wp\/v2\/users\/108"}],"replies":[{"embeddable":true,"href":"https:\/\/www.bordeaux-neurocampus.fr\/en\/wp-json\/wp\/v2\/comments?post=115810"}],"version-history":[{"count":2,"href":"https:\/\/www.bordeaux-neurocampus.fr\/en\/wp-json\/wp\/v2\/posts\/115810\/revisions"}],"predecessor-version":[{"id":142348,"href":"https:\/\/www.bordeaux-neurocampus.fr\/en\/wp-json\/wp\/v2\/posts\/115810\/revisions\/142348"}],"wp:featuredmedia":[{"embeddable":true,"href":"https:\/\/www.bordeaux-neurocampus.fr\/en\/wp-json\/wp\/v2\/media\/115760"}],"wp:attachment":[{"href":"https:\/\/www.bordeaux-neurocampus.fr\/en\/wp-json\/wp\/v2\/media?parent=115810"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/www.bordeaux-neurocampus.fr\/en\/wp-json\/wp\/v2\/categories?post=115810"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/www.bordeaux-neurocampus.fr\/en\/wp-json\/wp\/v2\/tags?post=115810"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}